If you’re a fan of smoky, cheesy, and deeply flavorful dishes, this Chipotle Quinoa Casserole is your next must-make dinner. It’s a one-pan wonder filled with quinoa, black beans, corn, and a creamy chipotle-spiced sauce that packs just the right amount of heat. Every bite is hearty, satisfying, and bursting with Tex-Mex flavor — perfect for busy weeknights or cozy weekends.
The first time I made this casserole, it came together almost by accident. I had leftover quinoa, a can of black beans, and a jar of chipotle peppers in adobo sauce — and figured I’d toss them all together with cheese. It smelled so good baking that my family gathered in the kitchen before it was even out of the oven. One bite later, everyone was hooked. Now, it’s right up there with my Quinoa Enchilada Casserole and Filling Mexican Sweet Potato Quinoa Casserole as one of our top comfort dinners.

Chipotle Quinoa Casserole
Ingredients
Equipment
Method
- Rinse quinoa under cold water. Cook it in broth according to package instructions. Once fluffy, set aside.
- In a large skillet, heat olive oil over medium heat. Sauté onion and garlic for 3–4 minutes until fragrant.
- Add cooked quinoa, black beans, corn, chipotle peppers, salsa, cumin, paprika, chili powder, salt, and pepper. Stir well to combine.
- Transfer mixture to a greased baking dish. Top with shredded cheese.
- Bake at 375°F (190°C) for 20 minutes, until cheese is melted and bubbly.
- Let rest for 5 minutes. Garnish with cilantro, green onions, and lime wedges before serving.
Nutrition
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Let us know how it was!Why You’ll Love Chipotle Quinoa Casserole
This Chipotle Quinoa Casserole is everything you love about comfort food — cheesy, creamy, and satisfying — but with a wholesome twist. Quinoa replaces rice for a boost of protein and texture, while chipotle peppers bring smoky warmth that ties the whole dish together. It’s naturally gluten-free, freezer-friendly, and great for meal prep too.
If you like cozy, crowd-pleasing recipes like my Cheesy Veggie Quinoa Casserole or bold, flavorful meals like Buffalo Chicken Bowls, this casserole will fit right into your kitchen routine.
Ingredients You’ll Need
For the Casserole:
- 1 cup uncooked quinoa (or 3 cups cooked)
- 2 cups vegetable or chicken broth (for cooking quinoa)
- 1 tablespoon olive oil
- 1 small onion, diced
- 2 garlic cloves, minced
- 1 can (15 oz) black beans, drained and rinsed
- 1 cup corn kernels (fresh, frozen, or canned)
- 1–2 chipotle peppers in adobo sauce, finely chopped
- 1 teaspoon cumin
- 1 teaspoon smoked paprika
- ½ teaspoon chili powder
- Salt and pepper to taste
- 1 cup salsa or diced tomatoes
For the Topping:
- 1 ½ cups shredded cheddar or Monterey Jack cheese (or dairy-free if preferred)
- Fresh cilantro, lime wedges, and sliced green onions for garnish
Like my Rice and Bean Casserole with Sweet Potatoes, this one relies on pantry staples and a few bold spices to create big flavor with minimal effort.
How to Make Chipotle Quinoa Casserole
Step 1: Cook the Quinoa
Rinse quinoa under cold water, then cook in broth according to package directions. Fluff and set aside.
Step 2: Sauté the Aromatics
In a large skillet, heat olive oil over medium heat. Add onion and garlic, cooking for 3–4 minutes until fragrant and translucent.
Step 3: Combine the Ingredients
Add the cooked quinoa, black beans, corn, chipotle peppers, salsa, cumin, paprika, chili powder, salt, and pepper. Stir until evenly combined.
Step 4: Assemble and Bake
Transfer the mixture into a greased baking dish. Top with shredded cheese and bake at 375°F (190°C) for 20 minutes, until bubbly and golden.
Step 5: Garnish and Serve
Let it rest for a few minutes before serving. Top with fresh cilantro, green onions, and a squeeze of lime for extra brightness.
It’s just as effortless and comforting as my Cheesy Tortilla Quiche: simple steps, big reward.
Tips for Perfect Chipotle Quinoa Casserole
- Adjust the heat: Use one chipotle for mild spice or two for more smoky heat.
- Make it creamier: Stir in a few spoonfuls of sour cream or Greek yogurt before baking.
- Add more veggies: Bell peppers, spinach, or zucchini fit right in.
- Boost the protein: Add shredded chicken or crumbled tofu for a hearty upgrade.
Like my Cottage Cheese Beef Noodle Bake, this recipe is all about layering simple ingredients into something cozy and irresistible.
Flavor Variations
- Tex-Mex Style: Add diced tomatoes and top with avocado slices before serving.
- Southwest Chicken Version: Mix in cooked chicken breast for a heartier meal.
- Vegan Option: Skip the cheese and use dairy-free alternatives.
- Extra Cheesy: Double the cheese and mix half into the filling before baking.
It’s as flexible as my Zucchini Chickpea Stir Fry, adapting easily to what’s in your pantry or what you’re craving.
How to Store and Reheat
Storage: Keep leftovers in an airtight container in the fridge for up to 4 days.
Freezing: Freeze in portions for up to 3 months. Thaw overnight before reheating.
Reheating: Reheat in the oven at 350°F or microwave individual servings until warm.
It’s as meal-prep friendly as my One-Pan Chicken Gallaba Skillet — perfect for busy schedules.
Frequently Asked Questions
1. How spicy is Chipotle Quinoa Casserole?
It’s mild to medium heat. You can control the spice by adjusting how much chipotle pepper you add.
2. Can I make it vegan?
Yes! Use dairy-free cheese or skip it — the smoky chipotle flavor stands strong on its own.
3. Can I add meat?
Definitely. Shredded chicken, ground turkey, or even chorizo make great additions.
4. Can I make it ahead of time?
Yes, assemble it up to a day ahead, refrigerate, and bake when ready to serve.
The Final Bite
This Chipotle Quinoa Casserole is smoky, cheesy, and full of bold flavor — everything you love about Tex-Mex comfort food in one easy, wholesome bake. It’s the perfect mix of creamy and spicy, with fluffy quinoa and melty cheese in every bite.
Serve it with a side of Christmas Bread Recipe or a simple salad for a cozy, complete meal that’ll have everyone asking for seconds.